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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
3
single cell RNA-seq
2
MeRIP-seq
Assay category
209
DNA binding
3
Transcription
Target of assay
846
histone modification
845
histone
428
narrow histone mark
417
broad histone mark
214
control
100
transcription factor
34
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
42
August, 2017
30
October, 2019
29
October, 2018
23
May, 2019
23
May, 2020
15
November, 2017
14
April, 2019
12
December, 2017
June, 2019
6
September, 2017
4
December, 2018
3
July, 2019
3
May, 2021
3
November, 2018
3
October, 2017
2
November, 2020
1
August, 2021
1
January, 2019
Available data
191
bam
83
fastq
54
tagAlign
10
bigWig
3
bed bed3+
3
tsv
Organism
213
Homo sapiens
Biosample type
187
tissue
79
cell line
37
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
47
liver
41
pancreas
31
brain
24
adipose tissue
24
connective tissue
20
vasculature
19
blood vessel
19
epithelium
17
limb
16
heart
11
nerve
8
kidney
8
spleen
7
artery
4
musculature of body
2
vein
Project
214
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
209
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
1
inconsistent ontology term
lab.title!
Bing Ren, UCSD
month_released!
June, 2019
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ChIP-seq
single cell RNA-seq
MeRIP-seq
tissue
liver
43
islet of Langerhans
13
2
tibial nerve
11
subcutaneous adipose tissue
10
body of pancreas
9
+ See 38 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cerebellar granule cell
2
endothelial cell of umbilical vein
2
+ See 8 more…
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