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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1100
ChIP-seq
813
total RNA-seq
450
ATAC-seq
363
single cell RNA-seq
201
DNase-seq
86
RNA microarray
84
snATAC-seq
68
WGBS
39
pCHi-C
24
Hi-C
20
RRBS
15
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1191
Transcription
1100
DNA binding
740
DNA accessibility
89
DNA methylation
24
3D chromatin structure
Target of assay
824
histone modification
823
histone
422
narrow histone mark
401
broad histone mark
195
control
86
transcription factor
32
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
340
May, 2020
286
August, 2017
274
October, 2019
245
May, 2021
232
August, 2021
200
June, 2019
200
May, 2022
182
February, 2023
166
July, 2018
146
February, 2021
120
May, 2019
91
November, 2017
90
July, 2019
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
48
December, 2017
47
April, 2018
47
September, 2023
40
March, 2020
40
May, 2024
39
November, 2019
26
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
August, 2022
1
January, 2018
March, 2023
Available data
1981
bam
1872
bigWig
1249
bed narrowPeak
874
tsv
739
fastq
645
bigBed narrowPeak
330
tagAlign
252
bed broadPeak
228
bed bed3+
217
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
5
bed bed3
3
cool
3
hdf5
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3268
Homo sapiens
Biosample type
2228
tissue
1048
primary cell
660
cell line
297
in vitro differentiated cells
7
stem cell
Organ
849
pancreas
connective tissue
490
adipose tissue
421
epithelium
375
liver
335
kidney
326
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2652
AMP
324
HPAP
234
T1D
47
KPMP
19
LungMap
Genome assembly (visualization)
1881
GRCh38
1866
hg19
Lab
2364
AMP-T2D consortium
324
Klaus Kaestner, Upenn
290
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
131
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
58
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
month_released!
March, 2023
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
3276 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
70
292
66
6
1
7
4
3
1
1
4
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
1
+ See 168 more…
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 81 more…
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