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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1181
ChIP-seq
1139
total RNA-seq
432
ATAC-seq
270
single cell RNA-seq
205
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
38
pCHi-C
26
Hi-C
20
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1427
Transcription
1181
DNA binding
726
DNA accessibility
95
DNA methylation
26
3D chromatin structure
Target of assay
862
histone modification
861
histone
436
narrow histone mark
425
broad histone mark
221
control
103
transcription factor
37
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
343
August, 2017
340
May, 2020
255
October, 2019
246
May, 2021
233
August, 2021
211
June, 2019
200
May, 2022
July, 2018
152
February, 2023
120
May, 2019
107
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2296
bam
2166
bigWig
1246
bed narrowPeak
1128
tsv
692
fastq
664
bigBed narrowPeak
338
tagAlign
258
bed broadPeak
238
bed bed3+
221
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3578
Homo sapiens
Biosample type
2595
tissue
992
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
655
pancreas
582
connective tissue
490
adipose tissue
375
liver
355
epithelium
335
kidney
326
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2961
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2176
GRCh38
2136
hg19
Lab
2671
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
139
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
April, 2018
July, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
3587 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
1
2
3
1
1
1
1
islet of Langerhans
69
158
67
1
7
3
1
1
4
kidney
27
49
75
64
13
6
1
1
1
bone element
84
+ See 174 more…
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
2
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 83 more…
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