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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1189
total RNA-seq
1138
ChIP-seq
369
ATAC-seq
366
single cell RNA-seq
209
DNase-seq
87
RNA microarray
82
snATAC-seq
74
WGBS
41
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1573
Transcription
1138
DNA binding
665
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
860
histone modification
859
histone
437
narrow histone mark
422
broad histone mark
210
control
73
transcription factor
36
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
1
chromatin remodeller
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
December, 2017
47
September, 2023
40
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2468
bam
2349
bigWig
1329
tsv
1180
bed narrowPeak
662
fastq
634
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
153
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
4
hdf5
3
cool
1
bed bed3
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3624
Homo sapiens
Biosample type
2633
tissue
1000
primary cell
656
cell line
335
in vitro differentiated cells
7
stem cell
Organ
796
pancreas
585
connective tissue
489
adipose tissue
370
epithelium
335
kidney
327
liver
290
heart
285
brain
151
bone element
135
vasculature
129
blood vessel
122
limb
96
musculature of body
43
nerve
40
artery
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3101
AMP
248
HPAP
217
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2324
GRCh38
2314
hg19
Lab
2811
AMP-T2D consortium
273
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
139
inconsistent ontology term
40
audit script error
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2017
February, 2023
organ_slims!
small intestine
BIOSAMPLE
ASSAY
3633 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
287
71
57
6
1
5
4
3
1
1
4
adipose tissue
382
2
2
3
1
liver
167
107
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 170 more…
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
25
13
35
12
31
1
pancreatic beta cell
11
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 89 more…
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