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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1158
ChIP-seq
1154
total RNA-seq
423
ATAC-seq
317
single cell RNA-seq
205
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1489
Transcription
1158
DNA binding
717
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
845
histone modification
844
histone
433
narrow histone mark
411
broad histone mark
215
control
103
transcription factor
37
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
343
August, 2017
340
May, 2020
250
October, 2019
246
May, 2021
231
August, 2021
216
June, 2019
200
May, 2022
July, 2018
148
February, 2023
115
May, 2019
105
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2316
bam
2192
bigWig
1217
bed narrowPeak
1176
tsv
736
fastq
645
bigBed narrowPeak
338
tagAlign
258
bed broadPeak
238
bed bed3+
221
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3613
Homo sapiens
Biosample type
2584
tissue
1038
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
694
pancreas
584
connective tissue
490
adipose tissue
388
epithelium
375
liver
335
kidney
326
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2996
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2190
hg19
2167
GRCh38
Lab
2706
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
139
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
3622 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
adipose tissue
2
382
3
3
1
liver
145
167
20
1
2
3
1
1
1
1
islet of Langerhans
71
172
68
6
1
7
4
3
1
1
4
kidney
27
49
75
64
13
6
1
1
1
bone element
84
+ See 173 more…
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 87 more…
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