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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1183
ChIP-seq
1158
total RNA-seq
460
ATAC-seq
319
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
41
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1495
Transcription
1183
DNA binding
758
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
865
histone modification
864
histone
439
narrow histone mark
425
broad histone mark
222
control
104
transcription factor
38
RNA binding protein
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
342
August, 2017
340
May, 2020
276
October, 2019
245
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
46
December, 2017
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2349
bam
2218
bigWig
1276
bed narrowPeak
1182
tsv
733
fastq
667
bigBed narrowPeak
338
tagAlign
261
bed broadPeak
242
bed bed3+
224
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3684
Homo sapiens
Biosample type
2655
tissue
1038
primary cell
632
cell line
391
in vitro differentiated cells
10
stem cell
Organ
694
pancreas
584
connective tissue
490
adipose tissue
388
epithelium
373
liver
335
kidney
326
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3068
AMP
324
HPAP
234
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2228
GRCh38
2216
hg19
Lab
2778
AMP-T2D consortium
324
Klaus Kaestner, Upenn
290
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
139
inconsistent ontology term
40
audit script error
25
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
July, 2018
organ_slims!
bone marrow
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
3693 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
adipose tissue
2
382
3
3
1
liver
143
167
20
1
2
3
1
1
1
1
islet of Langerhans
71
172
68
6
1
7
4
3
1
1
4
kidney
27
49
75
64
13
6
1
1
1
bone element
84
+ See 176 more…
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
5
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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