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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
693
total RNA-seq
678
ChIP-seq
452
ATAC-seq
317
single cell RNA-seq
201
DNase-seq
86
RNA microarray
84
snATAC-seq
68
WGBS
39
pCHi-C
25
Hi-C
20
RRBS
15
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1025
Transcription
742
DNA accessibility
678
DNA binding
89
DNA methylation
25
3D chromatin structure
Target of assay
824
histone modification
823
histone
narrow histone mark
401
broad histone mark
195
control
86
transcription factor
32
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
313
May, 2020
230
August, 2021
226
August, 2017
200
May, 2022
193
June, 2019
193
May, 2021
182
February, 2023
July, 2018
146
February, 2021
137
October, 2019
90
July, 2019
86
May, 2019
60
November, 2017
59
September, 2020
58
September, 2018
57
April, 2019
47
April, 2018
47
September, 2023
46
December, 2017
42
October, 2018
39
November, 2019
38
March, 2020
26
November, 2018
25
May, 2024
23
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
7
December, 2018
5
January, 2019
5
March, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
January, 2018
1
March, 2023
Available data
1479
bam
1336
bigWig
885
bed narrowPeak
712
tsv
625
fastq
516
bigBed narrowPeak
231
bed broadPeak
220
bed bed3+
209
bigBed broadPeak
176
tagAlign
157
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
5
bed bed3
3
cool
3
hdf5
1
bedpe
1
tar
Organism
2685
Homo sapiens
Biosample type
1799
tissue
892
primary cell
643
cell line
258
in vitro differentiated cells
8
stem cell
Organ
631
pancreas
connective tissue
478
adipose tissue
353
epithelium
329
liver
320
kidney
286
heart
169
brain
159
bone element
144
vasculature
139
blood vessel
107
limb
83
musculature of body
69
artery
58
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2108
AMP
324
HPAP
192
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1373
GRCh38
1360
hg19
Lab
1841
AMP-T2D consortium
324
Klaus Kaestner, Upenn
240
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
118
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
31
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent assembly
month_released!
July, 2018
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2691 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
172
34
68
6
1
7
4
3
1
1
4
liver
167
103
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
26
2
18
3
4
1
1
1
+ See 110 more…
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
9
35
5
31
1
monocyte
54
44
15
1
1
pancreatic beta cell
21
9
23
3
16
1
exocrine cell
39
+ See 77 more…
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