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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1152
ChIP-seq
460
ATAC-seq
367
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
22
DNase-seq
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
1152
DNA binding
571
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
846
histone modification
845
histone
428
narrow histone mark
417
broad histone mark
214
control
100
transcription factor
34
RNA binding protein
3
chromatin remodeller
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2295
bam
2172
bigWig
1346
tsv
1066
bed narrowPeak
783
fastq
457
bigBed narrowPeak
338
tagAlign
157
txt
153
zippedFastqFolder
75
bed broadPeak
64
xls
55
bed bed3+
38
bigBed broadPeak
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3635
Homo sapiens
Biosample type
2611
tissue
1033
primary cell
660
cell line
394
in vitro differentiated cells
10
stem cell
Organ
847
pancreas
568
connective tissue
489
adipose tissue
401
epithelium
373
liver
291
heart
256
brain
254
kidney
163
vasculature
159
blood vessel
159
bone element
90
limb
73
artery
54
eye
53
musculature of body
43
nerve
22
spleen
22
vein
20
lung
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3018
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2193
hg19
2182
GRCh38
Lab
2728
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
119
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
June, 2019
target.investigated_as!
other context
BIOSAMPLE
ASSAY
3644 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
71
68
6
7
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
2
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
+ See 159 more…
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 88 more…
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