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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
445
total RNA-seq
84
RNA microarray
48
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
9
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
463
Transcription
48
DNA binding
36
DNA accessibility
6
DNA methylation
Target of assay
31
transcription factor
12
control
5
histone
5
histone modification
3
broad histone mark
2
RNA binding protein
2
chromatin remodeller
2
narrow histone mark
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
503
bam
482
bigWig
459
tsv
93
fastq
89
txt
45
bed narrowPeak
36
bigBed narrowPeak
6
csv
1
bed bed3
1
bed bed3+
Organism
641
Homo sapiens
Biosample type
593
tissue
96
cell line
69
in vitro differentiated cells
48
primary cell
3
stem cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
49
liver
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
Project
596
AMP
45
HPAP
Genome assembly (visualization)
491
hg19
490
GRCh38
Lab
596
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
27
inconsistent control
BIOSAMPLE
ASSAY
641 results
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Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
liver
38
1
right lobe of liver
10
+ See 14 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
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