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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
84
RNA microarray
29
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
1
Hi-C
1
pCHi-C
Assay category
482
Transcription
56
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
494
bam
478
tsv
465
bigWig
89
txt
45
fastq
29
bed narrowPeak
6
csv
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
Organism
633
Homo sapiens
Biosample type
585
tissue
112
cell line
48
primary cell
31
in vitro differentiated cells
Organ
448
connective tissue
387
adipose tissue
150
bone element
45
pancreas
8
kidney
8
skeleton
6
epithelium
6
limb
1
liver
Project
588
AMP
45
HPAP
Genome assembly (visualization)
495
hg19
493
GRCh38
Lab
588
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
85
inconsistent ontology term
32
audit script error
BIOSAMPLE
ASSAY
633 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
Hi-C
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
19
19
1
kidney
5
+ See 15 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
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