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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
89
total RNA-seq
6
ChIP-seq
2
snATAC-seq
1
single cell RNA-seq
Assay category
98
DNA accessibility
90
Transcription
6
DNA binding
Target of assay
6
control
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2021
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
87
fastq
68
bed narrowPeak
16
tsv
11
bam
5
bed bed3
5
bigBed narrowPeak
5
bigWig
4
txt
2
bed bed3+
Organism
194
Homo sapiens
Biosample type
101
tissue
93
primary cell
16
in vitro differentiated cells
6
cell line
Organ
66
pancreas
56
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
100
AMP
76
HPAP
18
T1D
Genome assembly (visualization)
42
GRCh38
40
hg19
Lab
100
AMP-T2D consortium
76
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
6
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
2
27
pancreatic beta cell
2
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 3 more…
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