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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
ChIP-seq
26
ATAC-seq
24
total RNA-seq
8
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
Assay category
234
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
Target of assay
201
histone
201
histone modification
140
narrow histone mark
61
broad histone mark
33
control
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
232
bam
197
bigWig
184
bed narrowPeak
66
bigBed narrowPeak
63
tagAlign
17
fastq
12
bed broadPeak
10
tsv
8
bigBed broadPeak
6
bed bed3+
2
hic
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
299
Homo sapiens
Biosample type
265
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
Organ
102
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
33
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
8
pancreas
7
liver
4
gonad
4
ovary
3
connective tissue
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
1
spleen
Project
299
AMP
Genome assembly (visualization)
202
hg19
197
GRCh38
Lab
298
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
299 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
14
4
tibial nerve
35
1
4
2
tibial artery
23
1
2
brain
20
1
heart
5
2
1
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primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
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