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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
30
DNase-seq
18
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
128
DNA binding
112
Transcription
69
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
18
control
13
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
24
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
179
bed narrowPeak
166
bigWig
143
bam
114
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
325
Homo sapiens
Biosample type
313
tissue
66
cell line
12
primary cell
1
in vitro differentiated cells
Organ
851
pancreas
586
connective tissue
490
adipose tissue
epithelium
375
liver
335
kidney
326
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
325
AMP
Genome assembly (visualization)
200
GRCh38
122
hg19
Lab
285
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
325 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
smooth muscle cell of the coronary artery
1
See all biosamples
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