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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
ChIP-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
174
DNA accessibility
58
DNA methylation
25
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
45
May, 2021
13
July, 2019
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
bam
444
bigWig
311
fastq
244
tsv
160
bed narrowPeak
153
zippedFastqFolder
69
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
csv
1
tar
Organism
465
Homo sapiens
Biosample type
783
tissue
465
primary cell
89
in vitro differentiated cells
78
cell line
7
stem cell
Organ
164
epithelium
152
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
324
HPAP
116
AMP
24
T1D
1
ITG
Genome assembly (visualization)
44
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
91
AMP-T2D consortium
49
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
files.file_type!
bam
csv
month_released!
September, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
465 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
23
1
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