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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
51
single cell RNA-seq
41
WGBS
21
snATAC-seq
10
Hi-C
9
RRBS
4
ChIP-seq
3
total RNA-seq
2
DNase-seq
1
DNAme array
Assay category
129
DNA accessibility
54
Transcription
51
DNA methylation
10
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
57
May, 2020
18
September, 2020
13
July, 2019
12
February, 2023
6
May, 2021
3
October, 2019
3
October, 2022
1
March, 2020
1
March, 2023
Available data
bam
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
248
Homo sapiens
Biosample type
835
tissue
248
primary cell
73
cell line
51
in vitro differentiated cells
6
stem cell
Organ
95
epithelium
83
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
155
HPAP
92
AMP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
155
Klaus Kaestner, Upenn
92
AMP-T2D consortium
Kyle Gaulton, UCSD
1
ITG
Audit category:
8
inconsistent ontology term
4
audit script error
files.file_type!
bam
fastq
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
248 results
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ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
ChIP-seq
total RNA-seq
DNase-seq
DNAme array
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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