Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
9
RRBS
7
Hi-C
2
DNase-seq
1
DNAme array
Assay category
184
Transcription
174
DNA accessibility
57
DNA methylation
37
DNA binding
7
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
9
July, 2019
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
590
bigWig
bam
400
fastq
281
bed narrowPeak
267
tsv
153
zippedFastqFolder
98
bigBed narrowPeak
96
tagAlign
38
bed broadPeak
38
bigBed broadPeak
26
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
475
Homo sapiens
Biosample type
602
tissue
475
primary cell
98
in vitro differentiated cells
44
cell line
7
stem cell
Organ
164
epithelium
152
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
324
HPAP
126
AMP
24
T1D
1
ITG
Genome assembly (visualization)
50
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
91
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
files.file_type!
bam
month_released!
August, 2021
December, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
475 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
+ See 36 more…
See all biosamples
Download