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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
47
WGBS
16
total RNA-seq
7
Hi-C
6
RRBS
2
DNase-seq
Assay category
53
DNA methylation
51
DNA accessibility
16
Transcription
7
3D chromatin structure
Date released
80
May, 2022
February, 2023
19
September, 2020
8
July, 2019
7
August, 2020
6
February, 2021
3
October, 2019
3
October, 2022
1
March, 2020
Available data
bam
231
bigWig
201
fastq
116
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
127
Homo sapiens
Biosample type
127
primary cell
27
cell line
1
tissue
Organ
127
epithelium
115
pancreas
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
115
HPAP
12
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
115
Klaus Kaestner, Upenn
12
AMP-T2D consortium
Audit category:
4
audit script error
1
inconsistent ontology term
files.file_type!
bam
month_released!
February, 2023
organ_slims!
blood
BIOSAMPLE
ASSAY
127 results
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ATAC-seq
WGBS
total RNA-seq
Hi-C
RRBS
DNase-seq
primary cell
pancreatic alpha cell
29
31
15
1
pancreatic beta cell
16
16
1
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
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