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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ATAC-seq
81
total RNA-seq
56
snATAC-seq
47
WGBS
47
single cell RNA-seq
37
ChIP-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
171
DNA accessibility
128
Transcription
58
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
13
July, 2019
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
600
bigWig
bam
363
fastq
285
bed narrowPeak
270
tsv
134
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
420
Homo sapiens
Biosample type
865
tissue
420
primary cell
98
in vitro differentiated cells
79
cell line
7
stem cell
Organ
145
epithelium
133
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
265
HPAP
130
AMP
24
T1D
1
ITG
Genome assembly (visualization)
54
hg19
8
GRCh38
Lab
265
Klaus Kaestner, Upenn
95
AMP-T2D consortium
59
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
files.file_type!
bam
month_released!
September, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
420 results
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ATAC-seq
total RNA-seq
snATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
27
31
1
pancreatic beta cell
15
10
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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