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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 116ATAC-seq
  • 97total RNA-seq
  • 87single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 37ChIP-seq
  • 16pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2DNase-seq
  • 1DNAme array
Assay category
  • 184Transcription
  • 174DNA accessibility
  • 58DNA methylation
  • 37DNA binding
  • 103D chromatin structure
Target of assay
  • 34histone
  • 34histone modification
  • 22broad histone mark
  • 12narrow histone mark
  • 3control
Date released
  • 134May, 2022
  • 88February, 2023
  • 59September, 2020
  • 57May, 2020
  • 57May, 2021
  • 45February, 2021
  • 13July, 2019
  • 8January, 2021
  • 7August, 2020
  • 3October, 2019
  • 3October, 2022
  • 1August, 2017
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 613bigWig
  • bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 479Homo sapiens
Biosample type
  • 870tissue
  • 479primary cell
  • 103in vitro differentiated cells
  • 80cell line
  • 7stem cell
Organ
  • 164epithelium
  • 152pancreas
  • 8blood
  • 8bodily fluid
  • 5kidney
  • 5vasculature
  • 4blood vessel
  • 4brain
  • 3connective tissue
  • 2liver
  • 2vein
  • 1bone element
  • 1bone marrow
  • 1eye
  • 1heart
  • 1musculature of body
Project
  • 324HPAP
  • 130AMP
  • 24T1D
  • 1ITG
Genome assembly (visualization)
  • 54hg19
  • 11GRCh38
Lab
  • 324Klaus Kaestner, Upenn
  • 95AMP-T2D consortium
  • 59Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 31audit script error
  • 9inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

479 results

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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell2331
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