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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
245
total RNA-seq
200
ATAC-seq
185
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
432
Transcription
260
DNA accessibility
255
DNA binding
58
DNA methylation
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
72
September, 2018
59
September, 2020
48
July, 2018
47
February, 2021
45
August, 2017
43
April, 2018
31
June, 2019
29
October, 2019
27
July, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
August, 2021
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
1021
Homo sapiens
Biosample type
2555
tissue
1021
primary cell
599
cell line
364
in vitro differentiated cells
7
stem cell
Organ
374
epithelium
343
pancreas
31
connective tissue
26
kidney
21
vasculature
19
blood vessel
16
vein
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
7
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
496
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
571
hg19
487
GRCh38
Lab
463
AMP-T2D consortium
321
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
Audit category:
51
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
bigBed broadPeak
csv
hic
BIOSAMPLE
ASSAY
1021 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
exocrine cell
39
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