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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
125
total RNA-seq
97
ChIP-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
9
RRBS
6
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
201
DNA accessibility
186
Transcription
97
DNA binding
51
DNA methylation
6
3D chromatin structure
Target of assay
77
histone
77
histone modification
44
broad histone mark
33
narrow histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
147
May, 2020
134
May, 2022
120
May, 2021
32
October, 2019
31
June, 2019
27
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
5
April, 2018
5
December, 2019
5
May, 2019
5
November, 2020
3
October, 2022
2
February, 2021
1
August, 2017
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
557
Homo sapiens
Biosample type
1968
tissue
557
primary cell
224
cell line
207
in vitro differentiated cells
6
stem cell
Organ
146
epithelium
88
pancreas
28
connective tissue
26
kidney
23
vasculature
22
blood vessel
20
vein
13
musculature of body
10
heart
8
blood
8
bodily fluid
7
liver
4
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
281
AMP
155
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
288
hg19
193
GRCh38
Lab
248
AMP-T2D consortium
155
Klaus Kaestner, Upenn
153
Kyle Gaulton, UCSD
1
ITG
Audit category:
44
inconsistent ontology term
4
audit script error
files.file_type!
bed bed3+
fastq
tagAlign
organ_slims!
nerve
BIOSAMPLE
ASSAY
557 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
51
21
monocyte
15
54
1
1
1
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
2
33
1
pancreatic beta cell
13
16
1
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