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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
187
ATAC-seq
95
total RNA-seq
75
single cell RNA-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA binding
221
DNA accessibility
170
Transcription
52
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
152
May, 2021
134
May, 2022
102
May, 2020
76
February, 2023
59
August, 2017
59
September, 2020
47
September, 2018
February, 2021
31
June, 2019
30
October, 2019
9
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
1
November, 2020
Available data
611
bigWig
606
bam
364
fastq
294
bed narrowPeak
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
741
Homo sapiens
Biosample type
1403
tissue
741
primary cell
523
cell line
234
in vitro differentiated cells
3
stem cell
Organ
269
epithelium
238
pancreas
27
vasculature
23
blood vessel
20
kidney
20
vein
15
connective tissue
11
musculature of body
10
brain
8
blood
8
bodily fluid
6
heart
4
eye
3
liver
1
bone element
1
bone marrow
Project
353
AMP
279
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
345
hg19
253
GRCh38
Lab
320
AMP-T2D consortium
279
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
741 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
42
25
1
monocyte
85
15
1
1
1
Langerhans cell
73
21
pancreatic beta cell
13
23
11
16
1
exocrine cell
39
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