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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
2
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
20
DNA binding
2
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
19
October, 2019
3
November, 2017
2
July, 2019
1
March, 2020
Available data
27
bam
24
bigWig
17
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
25
Homo sapiens
Biosample type
128
tissue
66
cell line
25
primary cell
Organ
385
epithelium
346
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
25
AMP
Genome assembly (visualization)
20
hg19
14
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
spleen
BIOSAMPLE
ASSAY
25 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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