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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
245
total RNA-seq
193
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
9
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
267
DNA binding
254
DNA accessibility
57
DNA methylation
6
3D chromatin structure
Target of assay
231
histone
231
histone modification
121
broad histone mark
110
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
23
July, 2019
8
January, 2021
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
592
bam
586
bigWig
393
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
1031
Homo sapiens
Biosample type
2315
tissue
1031
primary cell
659
cell line
369
in vitro differentiated cells
7
stem cell
Organ
378
epithelium
339
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
509
AMP
317
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
585
hg19
490
GRCh38
Lab
476
AMP-T2D consortium
317
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
lab.title!
Xin Sun, UCSD
month_released!
August, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
1031 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
30
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
21
12
16
1
exocrine cell
39
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