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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
244
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
421
Transcription
266
DNA binding
233
DNA accessibility
52
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
July, 2018
February, 2021
43
April, 2018
32
October, 2019
27
July, 2019
27
June, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
601
bigWig
596
bam
359
fastq
284
bed narrowPeak
263
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
994
Homo sapiens
Biosample type
1946
tissue
994
primary cell
300
in vitro differentiated cells
208
cell line
7
stem cell
Organ
374
epithelium
340
pancreas
28
connective tissue
27
vasculature
24
blood vessel
24
kidney
20
vein
13
musculature of body
10
brain
9
heart
8
blood
8
bodily fluid
8
liver
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
510
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
586
hg19
495
GRCh38
Lab
477
AMP-T2D consortium
279
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
February, 2021
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
994 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
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