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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
244
total RNA-seq
195
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
5
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
432
Transcription
276
DNA binding
256
DNA accessibility
58
DNA methylation
5
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
25
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
March, 2020
1
March, 2023
1
November, 2018
Available data
606
bigWig
602
bam
404
fastq
290
bed narrowPeak
268
tsv
153
zippedFastqFolder
104
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
hdf5
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
tar
Organism
1043
Homo sapiens
Biosample type
2047
tissue
1043
primary cell
648
cell line
360
in vitro differentiated cells
3
stem cell
Organ
379
epithelium
341
pancreas
31
connective tissue
28
vasculature
26
kidney
24
blood vessel
19
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
514
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
590
hg19
499
GRCh38
Lab
481
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
March, 2020
September, 2017
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1043 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
33
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
21
12
16
1
exocrine cell
39
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