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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
3
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
84
DNA binding
5
DNA accessibility
1
DNA methylation
Target of assay
57
histone
57
histone modification
33
narrow histone mark
24
broad histone mark
21
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
113
bam
93
bigWig
80
bed narrowPeak
66
bigBed narrowPeak
58
fastq
38
bed broadPeak
38
bigBed broadPeak
bed bed3+
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
258
tissue
90
primary cell
61
in vitro differentiated cells
Organ
41
pancreas
35
epithelium
12
connective tissue
10
musculature of body
5
heart
3
eye
3
kidney
Project
90
AMP
Genome assembly (visualization)
70
hg19
65
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
ATAC-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle satellite cell
8
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