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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
27
snATAC-seq
6
WGBS
1
ATAC-seq
1
total RNA-seq
Assay category
61
Transcription
28
DNA accessibility
6
DNA methylation
Date released
204
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
31
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
93
fastq
55
tsv
51
bam
50
bigWig
1
bed bed3
bed bed3+
1
bed narrowPeak
Organism
95
Homo sapiens
Biosample type
665
tissue
95
cell line
95
primary cell
26
in vitro differentiated cells
Organ
43
pancreas
39
epithelium
4
connective tissue
Project
50
AMP
45
HPAP
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
50
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
27
audit script error
6
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
February, 2023
BIOSAMPLE
ASSAY
95 results
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single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
total RNA-seq
primary cell
Langerhans cell
12
27
pancreatic alpha cell
7
6
pancreatic beta cell
9
pancreatic acinar cell
5
pancreatic delta cell
4
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