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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
6
total RNA-seq
3
RRBS
2
DNase-seq
Assay category
15
DNA binding
6
Transcription
3
DNA methylation
2
DNA accessibility
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
11
October, 2019
7
July, 2019
5
May, 2019
3
June, 2019
Available data
30
bam
27
bigWig
21
bed narrowPeak
15
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
26
Homo sapiens
Biosample type
231
tissue
26
primary cell
19
cell line
Organ
385
epithelium
346
pancreas
31
connective tissue
29
vasculature
26
kidney
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
26
AMP
Genome assembly (visualization)
21
hg19
18
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
blood vessel
bone element
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
RRBS
DNase-seq
primary cell
epithelial cell of proximal tubule
10
1
1
kidney epithelial cell
5
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
renal cortical epithelial cell
1
1
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