Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
483
accessible chromatin
478
gene expression
371
target gene predictions
367
candidate regulatory elements
210
histone modifications
170
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
46
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
456
February, 2021
331
November, 2021
281
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
41
May, 2024
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
13
May, 2022
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1632
bed bed3+
591
tsv
409
bigWig
164
bed bed9
108
txt
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2436
Homo sapiens
Biosample type
2613
tissue
2481
primary cell
2345
cell line
470
in vitro differentiated cells
4
stem cell
Organ
829
epithelium
309
kidney
291
connective tissue
172
vasculature
126
pancreas
114
blood vessel
100
skin of body
65
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
33
heart
29
artery
23
eye
23
intestine
22
embryo
20
lymphatic vessel
20
vein
16
bronchus
13
bone element
12
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1789
AMP
331
ENCODE
281
KPMP
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1813
hg19
744
GRCh38
files.file_type!
bed bed9+
organ_slims!
ovary
skeleton
BIOSAMPLE
TYPE
2481 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
3
5
7
30
B cell
6
2
10
17
8
endothelial cell
15
9
7
3
1
2
2
1
2
+ See 446 more…
See all biosamples
Download