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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ATAC-seq
185
single cell RNA-seq
147
total RNA-seq
138
ChIP-seq
48
snATAC-seq
47
WGBS
27
DNase-seq
9
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
334
Transcription
273
DNA accessibility
138
DNA binding
48
DNA methylation
9
3D chromatin structure
Target of assay
102
histone
102
histone modification
56
narrow histone mark
46
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
72
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
October, 2019
22
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
409
fastq
398
bam
375
bigWig
172
tsv
160
bed narrowPeak
153
zippedFastqFolder
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
Organism
803
Homo sapiens
Biosample type
2452
tissue
803
primary cell
626
cell line
339
in vitro differentiated cells
10
stem cell
Organ
367
epithelium
346
pancreas
37
connective tissue
22
kidney
20
brain
15
vasculature
13
musculature of body
12
heart
12
liver
10
blood vessel
4
eye
2
adipose tissue
2
artery
1
pericardium
1
vein
Project
478
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
377
hg19
334
GRCh38
Lab
478
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedMethyl
csv
lab.title!
Kyle Gaulton, UCSD
month_released!
October, 2019
BIOSAMPLE
ASSAY
803 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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