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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
288
DNA accessibility
247
DNA binding
48
DNA methylation
4
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
47
June, 2019
45
August, 2017
43
April, 2018
30
October, 2019
19
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
November, 2018
Available data
603
bigWig
577
bam
393
fastq
295
bed narrowPeak
267
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1037
Homo sapiens
Biosample type
2548
tissue
1037
primary cell
556
cell line
353
in vitro differentiated cells
9
stem cell
Organ
374
epithelium
331
pancreas
35
connective tissue
30
kidney
30
vasculature
26
blood vessel
18
vein
14
brain
12
liver
11
musculature of body
10
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
512
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
603
hg19
532
GRCh38
Lab
480
AMP-T2D consortium
321
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
Audit category:
47
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedMethyl
hic
month_released!
January, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
1037 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
7
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
7
21
23
12
16
exocrine cell
39
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