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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
154
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
197
DNA accessibility
187
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
35
June, 2019
29
August, 2017
15
July, 2018
15
July, 2019
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
382
bigWig
367
bam
189
bed narrowPeak
171
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
678
Homo sapiens
Biosample type
2735
tissue
678
primary cell
582
cell line
368
in vitro differentiated cells
10
stem cell
Organ
epithelium
346
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
musculature of body
12
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
301
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
397
hg19
311
GRCh38
Lab
266
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
43
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed bedMethyl
month_released!
December, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
678 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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