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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
17
pCHi-C
10
RRBS
4
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
260
DNA accessibility
58
DNA methylation
37
DNA binding
4
3D chromatin structure
Target of assay
221
histone
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
18
August, 2017
12
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
2
May, 2019
2
October, 2018
1
August, 2021
1
November, 2018
Available data
406
bam
383
bigWig
336
fastq
270
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
812
Homo sapiens
Biosample type
1920
tissue
812
primary cell
577
cell line
277
in vitro differentiated cells
8
stem cell
Organ
317
epithelium
285
pancreas
25
connective tissue
16
kidney
10
brain
10
vasculature
9
liver
8
blood
8
blood vessel
8
bodily fluid
8
heart
5
musculature of body
3
eye
3
vein
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
371
AMP
321
HPAP
120
T1D
Genome assembly (visualization)
367
hg19
306
GRCh38
Lab
366
AMP-T2D consortium
321
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
27
audit script error
files.file_type!
bed broadPeak
hic
lab.title!
Karen Mohlke, UNC
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
812 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
monocyte
54
15
1
1
exocrine cell
39
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