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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
188
ATAC-seq
187
single cell RNA-seq
167
total RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
356
Transcription
253
DNA binding
248
DNA accessibility
57
DNA methylation
10
3D chromatin structure
Target of assay
219
histone
219
histone modification
114
broad histone mark
105
narrow histone mark
33
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
30
October, 2019
26
July, 2019
26
June, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
597
bam
333
fastq
289
bed narrowPeak
254
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
941
Homo sapiens
Biosample type
2219
tissue
941
primary cell
531
cell line
376
in vitro differentiated cells
10
stem cell
Organ
347
epithelium
309
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
488
AMP
248
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
578
hg19
484
GRCh38
Lab
453
AMP-T2D consortium
248
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
lab.title!
Stephen Parker, UMich
month_released!
February, 2023
organ_slims!
heart
BIOSAMPLE
ASSAY
941 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
35
12
25
31
1
pancreatic beta cell
13
23
12
11
16
1
CD8-positive, alpha-beta T cell
33
2
4
1
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