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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
154
total RNA-seq
128
ATAC-seq
116
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
1
DNase-seq
Assay category
272
Transcription
185
DNA accessibility
172
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
159
histone
159
histone modification
85
broad histone mark
74
narrow histone mark
14
control
2
RNA binding protein
2
transcription factor
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
25
June, 2019
18
July, 2019
16
August, 2017
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
5
November, 2020
2
June, 2018
1
March, 2023
1
November, 2017
November, 2018
1
October, 2019
Available data
382
bigWig
367
bam
189
bed narrowPeak
170
fastq
154
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
hdf5
1
bed bed3
1
csv
1
hic
Organism
654
Homo sapiens
Biosample type
2530
tissue
654
primary cell
463
cell line
367
in vitro differentiated cells
10
stem cell
Organ
epithelium
346
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
10
brain
10
heart
8
blood
8
bodily fluid
7
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
277
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
375
hg19
286
GRCh38
Lab
242
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
42
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
December, 2019
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
654 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
DNase-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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