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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
224
total RNA-seq
197
ATAC-seq
147
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
6
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
373
Transcription
256
DNA accessibility
241
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
208
histone
208
histone modification
107
broad histone mark
101
narrow histone mark
31
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
June, 2019
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2017
1
November, 2018
Available data
576
bigWig
572
bam
362
fastq
274
bed narrowPeak
263
tsv
134
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
950
Homo sapiens
Biosample type
2433
tissue
950
primary cell
537
cell line
391
in vitro differentiated cells
10
stem cell
Organ
360
epithelium
327
pancreas
33
connective tissue
26
kidney
vasculature
23
blood vessel
18
vein
13
musculature of body
10
brain
10
heart
8
blood
8
bodily fluid
7
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
480
AMP
265
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
561
hg19
471
GRCh38
Lab
445
AMP-T2D consortium
265
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
December, 2019
September, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
950 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
37
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
13
20
22
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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