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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
186
single cell RNA-seq
174
total RNA-seq
86
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
362
Transcription
226
DNA binding
146
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
189
histone
189
histone modification
97
broad histone mark
92
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
451
bigWig
447
bam
336
fastq
249
bed narrowPeak
199
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
819
Homo sapiens
Biosample type
2369
tissue
819
primary cell
601
cell line
389
in vitro differentiated cells
9
stem cell
Organ
323
epithelium
274
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
335
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
424
hg19
374
GRCh38
Lab
324
Klaus Kaestner, Upenn
300
AMP-T2D consortium
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
January, 2018
May, 2020
September, 2018
BIOSAMPLE
ASSAY
819 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
12
42
32
31
1
pancreatic beta cell
13
12
11
19
16
1
exocrine cell
39
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