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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
260
DNA accessibility
253
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
30
October, 2019
27
June, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
601
bigWig
597
bam
402
fastq
285
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1032
Homo sapiens
Biosample type
2411
tissue
1032
primary cell
344
in vitro differentiated cells
286
cell line
10
stem cell
Organ
379
epithelium
344
pancreas
32
connective tissue
25
vasculature
24
kidney
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
503
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
579
hg19
484
GRCh38
Lab
468
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
month_released!
October, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1032 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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