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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
2
ATAC-seq
2
DNase-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
22
DNA binding
5
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
March, 2023
1
November, 2018
Available data
31
bam
23
bigWig
21
bed narrowPeak
13
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
30
Homo sapiens
Biosample type
238
tissue
30
primary cell
29
cell line
8
in vitro differentiated cells
Organ
29
epithelium
17
blood vessel
17
vasculature
17
vein
11
kidney
1
liver
Project
30
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
month_released!
March, 2023
September, 2020
BIOSAMPLE
ASSAY
30 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
15
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
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