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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
9
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
259
DNA accessibility
249
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
34
control
5
RNA binding protein
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
29
July, 2019
29
October, 2019
27
June, 2019
8
January, 2021
7
August, 2020
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
592
bigWig
587
bam
404
fastq
279
bed narrowPeak
265
tsv
153
zippedFastqFolder
97
bigBed narrowPeak
96
tagAlign
bed broadPeak
42
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1022
Homo sapiens
Biosample type
2151
tissue
1022
primary cell
331
in vitro differentiated cells
196
cell line
10
stem cell
Organ
381
epithelium
346
pancreas
32
connective tissue
25
vasculature
24
kidney
23
blood vessel
18
vein
13
musculature of body
liver
10
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
493
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
570
hg19
477
GRCh38
Lab
458
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
organ_slims!
liver
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1022 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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