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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
12
total RNA-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
17
Transcription
12
DNA binding
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
12
June, 2019
10
July, 2019
5
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
38
bam
34
bigWig
17
bed narrowPeak
17
tsv
15
bigBed narrowPeak
8
bed bed3+
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
35
Homo sapiens
Biosample type
830
tissue
96
in vitro differentiated cells
66
cell line
35
primary cell
1
stem cell
Organ
384
epithelium
346
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
34
AMP
1
T1D
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
34
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
files.file_type!
bed broadPeak
organ_slims!
esophagus
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
primary cell
osteoblast
5
2
1
mesenchymal stem cell
7
cardiac fibroblast
5
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
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