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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
86
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
7
Hi-C
6
RRBS
2
DNase-seq
1
FAIRE-seq
Assay category
164
Transcription
86
DNA binding
75
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
62
histone
62
histone modification
33
narrow histone mark
29
broad histone mark
21
control
3
RNA binding protein
3
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
29
August, 2017
29
October, 2019
19
September, 2020
14
July, 2019
7
August, 2020
6
February, 2021
6
June, 2019
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
November, 2017
2
October, 2018
1
June, 2018
1
March, 2020
Available data
243
bam
238
fastq
232
bigWig
117
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
385
Homo sapiens
Biosample type
385
primary cell
79
cell line
24
in vitro differentiated cells
16
tissue
Organ
384
epithelium
346
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
233
AMP
152
HPAP
Genome assembly (visualization)
212
hg19
206
GRCh38
Lab
233
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
9
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
385 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
RRBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
15
2
1
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