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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
183
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
50
ChIP-seq
47
WGBS
15
pCHi-C
9
Hi-C
9
RRBS
2
DNase-seq
1
DNAme array
1
small RNA-seq
Assay category
421
Transcription
219
DNA accessibility
57
DNA methylation
50
DNA binding
9
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
78
May, 2021
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
27
September, 2018
26
August, 2017
23
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
June, 2019
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
581
bigWig
573
bam
406
fastq
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
771
Homo sapiens
Biosample type
1246
tissue
771
primary cell
258
cell line
210
in vitro differentiated cells
7
stem cell
Organ
300
epithelium
278
pancreas
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
327
AMP
324
HPAP
119
T1D
1
ITG
Genome assembly (visualization)
322
hg19
260
GRCh38
Lab
324
Klaus Kaestner, Upenn
322
AMP-T2D consortium
124
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
lab.title!
Mark McCarthy, Oxford
month_released!
October, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
771 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
small RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
6
31
1
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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