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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
102
single cell RNA-seq
53
total RNA-seq
48
ChIP-seq
9
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
157
Transcription
114
DNA accessibility
48
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
30
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
102
May, 2020
48
July, 2018
43
April, 2018
27
September, 2018
26
August, 2017
26
July, 2019
13
October, 2019
12
February, 2023
7
May, 2021
6
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
February, 2021
2
October, 2018
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
Available data
417
bam
378
bigWig
240
fastq
bed narrowPeak
164
tsv
103
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
336
Homo sapiens
Biosample type
1443
tissue
336
primary cell
211
in vitro differentiated cells
171
cell line
6
stem cell
Organ
148
epithelium
126
pancreas
21
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
liver
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
336
AMP
Genome assembly (visualization)
231
hg19
164
GRCh38
Lab
336
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
22
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
lab.title!
Xin Sun, UCSD
organ_slims!
heart
BIOSAMPLE
ASSAY
336 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
12
4
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