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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
187
single cell RNA-seq
154
ATAC-seq
56
snATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
212
DNA accessibility
58
DNA methylation
44
DNA binding
6
3D chromatin structure
Target of assay
31
control
16
histone
16
histone modification
10
narrow histone mark
6
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
27
July, 2019
27
September, 2018
26
August, 2017
8
January, 2021
8
June, 2019
August, 2020
5
December, 2019
5
October, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2017
2
October, 2018
1
August, 2021
1
March, 2023
May, 2019
1
November, 2018
Available data
578
bigWig
577
bam
399
fastq
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
771
Homo sapiens
Biosample type
1749
tissue
771
primary cell
262
in vitro differentiated cells
204
cell line
8
stem cell
Organ
292
epithelium
271
pancreas
22
connective tissue
16
vasculature
blood vessel
13
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
333
AMP
317
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
331
hg19
266
GRCh38
Lab
328
AMP-T2D consortium
317
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
28
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
August, 2020
May, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
771 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
24
31
6
1
pancreatic beta cell
21
12
14
16
6
1
monocyte
54
2
1
1
1
exocrine cell
39
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