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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
total RNA-seq
172
single cell RNA-seq
161
ATAC-seq
53
ChIP-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
6
Hi-C
2
DNase-seq
1
DNAme array
1
RRBS
Assay category
405
Transcription
192
DNA accessibility
53
DNA binding
43
DNA methylation
6
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
February, 2021
43
April, 2018
July, 2019
27
September, 2018
26
August, 2017
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
589
bigWig
588
bam
364
fastq
bed narrowPeak
245
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
32
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
715
Homo sapiens
Biosample type
1186
tissue
715
primary cell
236
in vitro differentiated cells
176
cell line
8
stem cell
Organ
281
epithelium
272
pancreas
12
connective tissue
11
vasculature
10
blood vessel
9
vein
8
blood
8
bodily fluid
7
kidney
6
liver
3
brain
2
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
315
AMP
279
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
307
hg19
256
GRCh38
Lab
310
AMP-T2D consortium
279
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
inconsistent ontology term
4
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
February, 2021
July, 2019
BIOSAMPLE
ASSAY
715 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
DNase-seq
DNAme array
RRBS
primary cell
pancreatic alpha cell
52
12
29
6
25
1
Langerhans cell
73
21
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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