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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
167
total RNA-seq
149
ATAC-seq
56
snATAC-seq
47
WGBS
40
ChIP-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
356
Transcription
207
DNA accessibility
57
DNA methylation
40
DNA binding
10
3D chromatin structure
Target of assay
33
control
21
histone
21
histone modification
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
February, 2023
77
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
27
September, 2018
26
July, 2019
18
August, 2017
12
October, 2019
8
January, 2021
7
August, 2020
6
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
496
bam
493
bigWig
293
fastq
254
tsv
bed narrowPeak
153
zippedFastqFolder
79
bigBed narrowPeak
53
tagAlign
38
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
687
Homo sapiens
Biosample type
1564
tissue
687
primary cell
232
in vitro differentiated cells
197
cell line
8
stem cell
Organ
262
epithelium
233
pancreas
22
connective tissue
15
vasculature
14
kidney
13
blood vessel
10
brain
8
blood
8
bodily fluid
8
liver
8
vein
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
318
AMP
248
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
327
hg19
263
GRCh38
Lab
313
AMP-T2D consortium
248
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
21
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
February, 2023
organ_slims!
heart
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
687 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
12
25
29
31
6
1
pancreatic beta cell
12
11
16
16
6
1
monocyte
54
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
1
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