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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
184
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
47
WGBS
43
ChIP-seq
10
Hi-C
7
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
372
Transcription
217
DNA accessibility
54
DNA methylation
43
DNA binding
10
3D chromatin structure
Target of assay
29
control
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
27
September, 2018
26
August, 2017
24
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
7
June, 2019
5
December, 2019
4
November, 2020
3
August, 2018
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
426
bam
411
bigWig
406
fastq
209
tsv
153
zippedFastqFolder
bed narrowPeak
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
25
bed bed3+
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
697
Homo sapiens
Biosample type
1607
tissue
697
primary cell
227
cell line
135
in vitro differentiated cells
8
stem cell
Organ
299
epithelium
277
pancreas
21
connective tissue
16
vasculature
14
blood vessel
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
324
HPAP
319
AMP
53
T1D
1
ITG
Genome assembly (visualization)
271
hg19
214
GRCh38
Lab
324
Klaus Kaestner, Upenn
319
AMP-T2D consortium
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
June, 2018
May, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
697 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
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