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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
47
WGBS
45
ChIP-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
217
DNA accessibility
58
DNA methylation
45
DNA binding
9
3D chromatin structure
Target of assay
32
control
16
histone
16
histone modification
10
narrow histone mark
6
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
590
bigWig
578
bam
409
fastq
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
780
Homo sapiens
Biosample type
1655
tissue
780
primary cell
256
in vitro differentiated cells
242
cell line
8
stem cell
Organ
287
epithelium
278
pancreas
22
connective tissue
10
brain
9
kidney
8
blood
8
bodily fluid
8
liver
8
vasculature
7
heart
6
blood vessel
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
335
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
335
hg19
273
GRCh38
Lab
330
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
29
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
October, 2019
September, 2023
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
780 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
monocyte
54
2
1
1
1
exocrine cell
39
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